Does Goku have kryptonite? No? Then he'll probably be screaming senselessly for fifteen episodes and then get his ass kicked by superman.
Atlantis? You mean that ancient Greek city that was destroyed thousands of years ago after a tsunami? What a save.
Goku. Superman doesn't have the strength to hurt goku so he's just take his sweet ass time traveling around the world for kryptonite.
Or he could go on a quest to find the 7 Dragon Spheres to simply make Superman have no silly superpowers.